PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0131s0060.3.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 416aa    MW: 46922.1 Da    PI: 6.5082
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0131s0060.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1645.3e-51161441128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWk 84 
                             +ppGfrFhPt+eel+++yL+kkv+ ++++l +vi+evd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat++g+Wk
  SapurV1A.0131s0060.3.p  16 VPPGFRFHPTEEELLHYYLRKKVAYERIDL-DVIREVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWK 101
                             69****************************.9***************964444222455**************************** PP

                     NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                             atg+dk ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl
  SapurV1A.0131s0060.3.p 102 ATGRDKIIYS-GFKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144
                             **********.9999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-5712174IPR003441NAC domain
PROSITE profilePS5100556.30816174IPR003441NAC domain
PfamPF023659.7E-2717144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MPDDMVNLSI NGQSQVPPGF RFHPTEEELL HYYLRKKVAY ERIDLDVIRE VDLNKLEPWD  60
IQEKCKIGST PQNDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKIIY SGFKRIGLRK  120
TLVFYKGRAP HGQKSDWIMH EYRLDDSTHE TNVSNPIGEA VPEEGWVVCR VFRKKNYQKT  180
LESPKGSSSS LDSKAHQILG SGNEGVLDQI LMYMGRTCKM ENETLNSMNI SNNSNNSSLR  240
FLSEGLHERF MHLPRLDSPT LPPIPISSPC FDQDRNFKYS CYPQSYDDML TENEPSSPNQ  300
VGNGTFDMSS SSMTHDSKSG QLNDWATLDR LVASQLNGHG VETSKQLSCF NSDPNASFGL  360
SPDDEMQLSH LQHSHGSPNI QANSSHVYSN ENDLWSFTKS SSPSSSSDPL CHLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-481217611170Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ2158470.0HQ215847.1 Populus trichocarpa wood-associated NAC domain transcription factor 1A (WND1A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002317059.10.0hypothetical protein POPTR_0011s15640g
SwissprotQ84WP61e-117NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA9PDI00.0A9PDI0_POPTR; Uncharacterized protein
STRINGPOPTR_0011s15640.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.11e-101NAC family protein